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   <div id="projectname">NINJA
   &#160;<span id="projectnumber">2.x</span>
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<div class="contents">
<div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>

<h3><a id="index_d"></a>- d -</h3><ul>
<li>D
: <a class="el" href="class_tree_builder.html#a3492015b7d90ae531e127d48edd57a3f">TreeBuilder</a>
</li>
<li>DECOMPRESSED_GAPS
: <a class="el" href="class_distance_calculator.html#a9f70a25047b64665cb1ac392482df94f">DistanceCalculator</a>
</li>
<li>DEFAULT_CAPACITY
: <a class="el" href="class_binary_heap.html#a0801f4b699bbca28d880f10c37e6abee">BinaryHeap</a>
, <a class="el" href="class_binary_heap___four_ints.html#ab577dd35837b5bb7eadfd2e32231674a">BinaryHeap_FourInts</a>
, <a class="el" href="class_binary_heap___int_key___two_ints.html#ab17a0cfd48b4c2a9f6ad859a6389366b">BinaryHeap_IntKey_TwoInts</a>
, <a class="el" href="class_binary_heap___two_ints.html#a6f4be2950530c270562b46fea29faec6">BinaryHeap_TwoInts</a>
</li>
<li>deleteAll()
: <a class="el" href="class_array_heap_ext_mem.html#a49b44e6cebc42ae0ead6ae51fcde6a87">ArrayHeapExtMem</a>
</li>
<li>deleteMin()
: <a class="el" href="class_binary_heap.html#a37e19e8dadb4e66fb148fed5b56aa86e">BinaryHeap</a>
, <a class="el" href="class_binary_heap___four_ints.html#a228e5e686175ef82acc7ed61a15c6b75">BinaryHeap_FourInts</a>
, <a class="el" href="class_binary_heap___int_key___two_ints.html#a2c6c4999917c20d9daee36e60aae4908">BinaryHeap_IntKey_TwoInts</a>
, <a class="el" href="class_binary_heap___two_ints.html#a4d9f2c086da3211a124893f2231fe427">BinaryHeap_TwoInts</a>
</li>
<li>describeHeap()
: <a class="el" href="class_array_heap_ext_mem.html#abeadfba6f8a622814d9750c72f31fe3b">ArrayHeapExtMem</a>
</li>
<li>diskD
: <a class="el" href="class_tree_builder_ext_mem.html#ab7249446a478f7b77e30e4acf832913a">TreeBuilderExtMem</a>
</li>
<li>dist
: <a class="el" href="class_argument_handler.html#ae260b096d1b4cb57e0539b8d37ca1ce6a1af730d3ffbdc6354d6bda2549356cef">ArgumentHandler</a>
, <a class="el" href="class_tree_builder_manager.html#a4cd821248549c591777002b96d1b1f17a19cba20113304d5be5b0b1b3cdb11b91">TreeBuilderManager</a>
</li>
<li>distance
: <a class="el" href="class_argument_handler.html#ae693a55bec1ed6005f0976a40a7f854aa9d20bc1085ccd1932c0ffd1d97a10dc6">ArgumentHandler</a>
, <a class="el" href="class_tree_builder_manager.html#af1e010b6d69ec4c8a7860041ba823b68a6d9503e62c1cc7af8faafe95ca03fa9f">TreeBuilderManager</a>
</li>
<li>DistanceCalculator()
: <a class="el" href="class_distance_calculator.html#a2a8861e559827f4a9324b854edc13e58">DistanceCalculator</a>
</li>
<li>DistanceReader()
: <a class="el" href="class_distance_reader.html#a47ba3dd618c5fd838ff01a656a5c9cd9">DistanceReader</a>
</li>
<li>DistanceReaderExtMem()
: <a class="el" href="class_distance_reader_ext_mem.html#aefe2b4edd62f967e62a40ce70587876d">DistanceReaderExtMem</a>
</li>
<li>distCalc
: <a class="el" href="class_distance_reader.html#ac922b8b974d75860b98ba760f04ba478">DistanceReader</a>
, <a class="el" href="class_distance_reader_ext_mem.html#a65401a3a75c63256e357707677ea9231">DistanceReaderExtMem</a>
</li>
<li>distInMem
: <a class="el" href="class_tree_builder.html#a93869c0b95d628222e1e1f641a696cc3">TreeBuilder</a>
</li>
<li>dna
: <a class="el" href="class_argument_handler.html#ac2a6552abc7c6449b625791aefdf6d87af8d1253b6d8eecce0eea5eff86ddc63e">ArgumentHandler</a>
, <a class="el" href="class_distance_calculator.html#aba37861b27b2e9a8e12b0aea4fcb5c7cafb040d095728a3f8116779a3cd63b2af">DistanceCalculator</a>
, <a class="el" href="class_sequence_file_reader.html#a8cc42e15f26ed4a680ac4b968f0922a7aeafabf791da5b60629a8c2eea71c9ee1">SequenceFileReader</a>
, <a class="el" href="class_tree_builder_manager.html#ae26c0058859fbe67055a43f55b7c5008a9cf0eb2046097228c5269e9da5e47cba">TreeBuilderManager</a>
</li>
<li>dna_chars
: <a class="el" href="class_distance_calculator.html#a1f57ec0ac50ea709a7a8c349167d6199">DistanceCalculator</a>
</li>
<li>doJob()
: <a class="el" href="class_tree_builder_manager.html#a82bd45375c241cc86bf5d26f4fef05ed">TreeBuilderManager</a>
</li>
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